Authors : C. Fournier, C. Pradal, B. Andrieu
- Contributors :
- M Abichou (wheat parameteristion, documentation, plantgen),
- C Chambon (plantgen, documentation, povray, fit, io widgets)
Institutes : INRA, CIRAD
Status : R and Python package (+ L-system)
License : Cecill-C
Alinea.Adel (Architectural model of DEvelopment based on L-systems) allows to simulate the 3D architectural development of the shoot of gramineaous plant.
The package hosts generic data structure and simulation tools for gramineaous plants(Fournier & Pradal, unpublished), the Adel-Maize (Fournier & Andrieu, 1998), Adel-Wheat (Fournier et al. 2003) models, together with the wheat parameterization model of Abichou et al. (2013) and the plastic leaf model of Fournier & Pradal (2012)
python setup.py install
- OpenAlea.Deploy
- OpenAlea.Mtg
- OpenAlea.core
- OpenAlea.visualea
- OpenAlea.PlantGl
- NumPy
- Scipy
- MatplotLib
- Pandas
- Rpy2
Create an environment:
mamba create -n adel -c conda-forge -c openalea3 alinea.adel -y
Activate the environment:
conda activate adel
Locate RHOME:
R RHOME
Set R_HOME to the R HOME dir returned above:
conda env config vars set R_HOME=r_home_dir_returned_by_rhome
Create an environment
mamba env create -n adel -f conda/environment.yml
Set R_HOME (see above)
Install adel
git clone https://github.com/openalea-incubator/adel.git
cd adel
pip install -e .