8000 oolonek (Pierre-Marie Allard) / Starred · GitHub
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@mandelbrot-project @lotusnprod @commons-research @digital-botanical-gardens-initiative

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Starred repositories

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Build Postgres Extensions with Rust!

Rust 4,000 277 Updated May 19, 2025

🤖 MetaboT 🍵 is an AI system that accelerates mass spectrometry-based metabolomics data mining.

Jupyter Notebook 7 Updated May 12, 2025

Rust library for reading chemical formats

Rust 4 Updated May 21, 2025

A SMILES parser based on Purr

Rust 3 Updated May 21, 2025

A fantastic crate for formatting numbers using the appropriate unicode characters

Rust 13 1 Updated Dec 12, 2024

A set of SPARQL examples that are used in LOTUS

HTML 1 Updated May 9, 2025

Rust programming, in Italian.

Rust 76 1 Updated Sep 11, 2021

Rust programming, in French.

Rust 1,547 200 Updated May 7, 2025
Rust 3 Updated Nov 15, 2024

A visualization library for Rust

Rust 2,236 88 Updated May 17, 2025

National Microbiome Data Collaborative (NMDC) unified data model

Python 33 9 Updated May 23, 2025

The Object Oriented Linked Data Schema

15 Updated May 15, 2025

Schema and generated objects for biolink data model and upper ontology

Python 196 78 Updated May 22, 2025

Specification for the ELN File Format

Python 55 10 Updated Mar 24, 2025

Python library for RO-Crate

Python 63 32 Updated May 15, 2025

a biodiversity dataset tracker

Java 28 2 Updated May 22, 2025

Navigate and access biodiversity datasets in the content universe

HTML 1 1 Updated Oct 18, 2024

A set of SPARQL examples that are used in different SIB resources

HTML 18 21 Updated May 20, 2025

💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predic…

TypeScript 17 3 Updated Apr 30, 2025

An app for crossposting your posts from bluesky to twitter and mastodon

Python 246 38 Updated May 22, 2025

python toolkit for the analysis of metabolomics data

Python 6 1 Updated Apr 21, 2025

Detect polymer contaminants in mass spectra.

Rust 9 1 Updated Jun 12, 2023

An Implementation of MassQL for Streamlining Common Mass Spectrometry Analysis Workflows

Python 1 Updated May 15, 2025

Client for accessing a Thermo Scientific VisionMate scanner via TCP/IP

Java 2 Updated Dec 14, 2022

interactive & hardware agnostic SDK for lab automation

Python 236 84 Updated May 23, 2025

MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)

Jupyter Notebook 71 9 Updated May 9, 2025

A modern cookiecutter template for Python projects that use uv for dependency management

Python 858 108 Updated May 21, 2025

A ML pipeline for the prediction of specialised metabolites precursors.

Jupyter Notebook 4 Updated Oct 22, 2024

Python3 API for the Netatmo Weather Station

Python 37 18 Updated Jul 19, 2023

Access large language models from the command-line

Python 7,673 461 Updated May 25, 2025
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