Stars
Genome modeling and design across all domains of life
A JupyterLab plugin to facilitate invocation of code formatters.
Zenith - sort of like top or htop but with zoom-able charts, CPU, GPU, network, and disk usage
This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.
The central location for code in the NewAtlantis fellowship program
🌊 Robust workflows for gathering data about your local ocean.
Scripts to benchmark and train foldseek
A Google Apps Script for syncing ICS/ICAL files faster than the current Google Calendar speed
Efficient evolution from protein language models
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein sequence.
Computational analysis of single-cell alternative splicing: A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Bioinformatics and Systems Bi…
Simulation study of recoding effectiveness
Converting genomic sequence data to tensor-valued orthogonal polynomials and projecting phenotypes onto sequence space.
MyGene.info: A BioThings API for gene annotations
A R Bioconductor package for accessing MyGene.info services
mygene is an easy-to-use Python wrapper to access MyGene.Info services.
Ad115 / EnsemblRest
Forked from sayanarijit/RESTEasyA Python interface to the Ensembl REST APIs, biological data at your fingertips.
Run tools on FASTA files with gnu parallel, and then parse the results.
OpenConnect wrapper which logs into a GlobalProtect gateway, authenticating with Okta
A tool for fast and accurate summarizing of variant calling format (VCF) files
Repo for running command line-based BLAST in Jupyter environment provided via Binder.