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OHSU CEDAR

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  1. TITAN TITAN Public

    Alex Chitsazan's package TITAN for scRNA-seq (Topic Inference of Transcriptionally Associated Networks), an unsupervised Bayesian topic modelling based approach utilizing Latent Dirichlet Allocatio…

    R 5 1

  2. unidex unidex Public

    python implementation of a universal demultiplexer built in mind for combinatorial indexing

    Python 3

  3. scMKL scMKL Public

    Jupyter Notebook 3

  4. WGS-nextflow-workflow WGS-nextflow-workflow Public

    Nextflow 3 1

  5. qupath_monaillabel_plugin qupath_monaillabel_plugin Public

    Forked from qupath/qupath

    QuPath - Bioimage analysis & digital pathology

    Java 3 1

  6. cfRNA-seq-pipeline-Ngo-manuscript-2019 cfRNA-seq-pipeline-Ngo-manuscript-2019 Public

    This pipeline contains the data processing steps used for Thuy Ngo's 2019 cell-free RNA manuscript

    R 2 5

Repositories

Showing 10 of 41 repositories
  • aced-evotypes Public
    ohsu-cedar-comp-hub/aced-evotypes’s past year of commit activity
    0 0 0 0 Updated May 6, 2025
  • scMKL Public
    ohsu-cedar-comp-hub/scMKL’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 0 1 0 Updated May 6, 2025
  • SlurmStats Public

    Tools to study sacct data to optimize Slurm Jobs

    ohsu-cedar-comp-hub/SlurmStats’s past year of commit activity
    Shell 2 0 0 0 Updated May 6, 2025
  • qupath_monaillabel_plugin Public Forked from qupath/qupath

    QuPath - Bioimage analysis & digital pathology

    ohsu-cedar-comp-hub/qupath_monaillabel_plugin’s past year of commit activity
    Java 3 GPL-3.0 303 0 0 Updated May 2, 2025
  • monailabel_cedar_app Public
    ohsu-cedar-comp-hub/monailabel_cedar_app’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Apr 30, 2025
  • ohsu-cedar-comp-hub.github.io Public

    A work-in-progress reference for CEDAR

    ohsu-cedar-comp-hub/ohsu-cedar-comp-hub.github.io’s past year of commit activity
    Ruby 0 1 0 0 Updated Apr 24, 2025
  • TITAN Public

    Alex Chitsazan's package TITAN for scRNA-seq (Topic Inference of Transcriptionally Associated Networks), an unsupervised Bayesian topic modelling based approach utilizing Latent Dirichlet Allocation (LDA

    ohsu-cedar-comp-hub/TITAN’s past year of commit activity
    R 5 GPL-3.0 1 0 0 Updated Mar 27, 2025
  • scNMT_NOMeWorkFlow Public Forked from ashrosewood/scNMT_NOMeWorkFlow
    ohsu-cedar-comp-hub/scNMT_NOMeWorkFlow’s past year of commit activity
    HTML 0 1 0 0 Updated Mar 20, 2025
  • 2024_ngolab_cfRNA Public
    ohsu-cedar-comp-hub/2024_ngolab_cfRNA’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Mar 12, 2025
  • DataMgtTools Public
    ohsu-cedar-comp-hub/DataMgtTools’s past year of commit activity
    Shell 0 0 0 0 Updated Feb 3, 2025
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