Stars
Command line tool to generate documentation in the form of a model card
A list of interesting genome browser and genome visualization programs
Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.
Harmonization of AMR predictor tool outputs
Pipeline to fetch metadata and raw FastQ files from public databases
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
SMN1 copy-number and sequence variant analysis from next generation sequencing data
HiFi-based caller for highly similar paralogous genes
A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS
Qualitative data analysis for text, images, audio, video. Cross platform. Python 3.10 or newer and PyQt6.
Pregnancy Infomation Needs Ontology
Managing windows size and position in OSX
A ShiftIt like Hammerspoon window management configuration
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
Lynis - Security auditing tool for Linux, macOS, and UNIX-based systems. Assists with compliance testing (HIPAA/ISO27001/PCI DSS) and system hardening. Agentless, and installation optional.
Canvas - Copy number variant (CNV) calling from DNA sequencing data
Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (C…
The open-source version of PhenoTips is no longer maintained. PhenoTips makes it simple to record clinical findings observed in patients with possible genetic disorders through an easy-to-use Web i…
Match up paired end fastq files quickly and efficiently.