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Starred repositories
CLEAN: a contrastive learning model for high-quality functional prediction of proteins
Protein structure comparison tools such as SSAP and SNAP
A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
Fan-made "Star Wars: X-Wing Miniatures Game" simulator
MHDDOS_PROXY - IT Army of Ukraine
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…
Making large AI models cheaper, faster and more accessible
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
Tool to plot synteny and structural rearrangements between genomes
A flexible pipeline for complete analysis of bacterial genomes
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
Foldseek enables fast and sensitive comparisons of large structure sets.
geNomad: Identification of mobile genetic elements
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the mod…
Deep functional residue identification