8000 Allow ABACAS for multifasta · nf-core/viralrecon@203542c · GitHub
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Allow ABACAS for multifasta #1437

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Allow ABACAS for multifasta

Allow ABACAS for multifasta #1437

Re-run triggered March 28, 2025 15:40
@reichan1998reichan1998
#481
reichan1998:abacas_multifasta
Status Cancelled
Total duration 30m 18s
Artifacts –

ci.yml

on: pull_request
Matrix: test
Matrix: test_illumina_fragmented
Matrix: test_nanopore
Matrix: test_parameters
Matrix: test_sispa
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41 errors
Test parameters (24.04.2 | --consensus_caller ivar | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (24.04.2 | --consensus_caller ivar | docker)
The operation was canceled.
Test parameters (24.04.2 | --variant_caller bcftools --consensus_caller ivar | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (24.04.2 | --variant_caller bcftools --consensus_caller ivar | docker)
The operation was canceled.
Test parameters (24.04.2 | --skip_fastp --skip_pangolin | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (24.04.2 | --skip_fastp --skip_pangolin | docker)
The operation was canceled.
Test parameters (24.04.2 | --skip_kraken2 | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (24.04.2 | --skip_kraken2 | docker)
The operation was canceled.
Test parameters (24.04.2 | --spades_mode corona | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (24.04.2 | --spades_mode corona | docker)
The operation was canceled.
Test parameters (24.04.2 | --skip_assembly | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (24.04.2 | --skip_assembly | docker)
The operation was canceled.
Test parameters (24.04.2 | --spades_mode metaviral | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (24.04.2 | --spades_mode metaviral | docker)
The operation was canceled.
Test parameters (24.04.2 | --skip_plasmidid false --skip_asciigenome | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (24.04.2 | --skip_plasmidid false --skip_asciigenome | docker)
The operation was canceled.
Test parameters (24.04.2 | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (24.04.2 | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
The operation was canceled.
Test parameters (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.< C0EA /div>
Test parameters (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
The operation was canceled.
Test parameters (latest-everything | --consensus_caller ivar | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (24.04.2 | --skip_noninternal_primers --threeprime_adapters | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (latest-everything | --consensus_caller ivar | docker)
The operation was canceled.
Test parameters (latest-everything | --variant_caller bcftools --consensus_caller ivar | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (latest-everything | --variant_caller bcftools --consensus_caller ivar | docker)
The operation was canceled.
Test parameters (latest-everything | --skip_fastp --skip_pangolin | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (latest-everything | --skip_fastp --skip_pangolin | docker)
The operation was canceled.
Test parameters (latest-everything | --skip_cutadapt --skip_snpeff | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (latest-everything | --skip_cutadapt --skip_snpeff | docker)
The operation was canceled.
Test parameters (latest-everything | --skip_kraken2 | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (latest-everything | --skip_kraken2 | docker)
The operation was canceled.
Test parameters (latest-everything | --spades_mode metaviral | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (latest-everything | --spades_mode metaviral | docker)
The operation was canceled.
Test parameters (latest-everything | --spades_mode corona | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (latest-everything | --spades_mode corona | docker)
The operation was canceled.
Test parameters (latest-everything | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (latest-everything | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
The operation was canceled.
Test parameters (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
The operation was canceled.
Test parameters (latest-everything | --skip_plasmidid false --skip_asciigenome | docker)
The job was canceled because "_24_04_2_docker_--skip_cu" failed.
Test parameters (latest-everything | --skip_plasmidid false --skip_asciigenome | docker)
The operation was canceled.
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