Replace local snpeff_ann module with nf-core/snpeff/snpeff
#1465
ci.yml
on: pull_request
Matrix: test
Matrix: test_nanopore
Matrix: test_parameters
Matrix: test_sispa
Annotations
76 errors and 16 warnings
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Run pipeline with test data (latest-everything | test | docker)
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Test nanopore (24.10.5 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | docker)
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Test nanopore (latest-everything | --gff false --freyja_depthcutoff 1 | docker)
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Test SISPA (24.10.5 | --gff false | docker)
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Test SISPA (24.10.5 | --gff false | docker)
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Test SISPA (latest-everything | --gff false | docker)
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