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Issues list

nf-core/viralintegration suitable for TES data?
#83 opened May 21, 2025 by tdfy
JSON schema: Viralintegration documentation Improvements or additions to documentation
#82 opened Mar 25, 2025 by jen-reeve
15 tasks
Error in STAR_ALIGN: Segmentation fault with STAR v2.7.9a bug Something isn't working
#81 opened Nov 13, 2024 by jonbra
refine_VIF_output.R fails when *.vif.evidence_counts.tsv is empty bug Something isn't working
#80 opened Jul 25, 2024 by katgorski
Mulitmapping reads dropped resulting in empty output files using GRCh37 bug Something isn't working
#77 opened Apr 2, 2024 by nick-phillips
The pipeline failed on the test_full profile option (segmentation fault, exit code 139) bug Something isn't working
#76 opened Mar 7, 2024 by DarkoCucin
1
URGENT: pin nf-validation version bug Something isn't working
#74 opened Feb 22, 2024 by nvnieuwk
@alyssa-ab
1
chimeric_contig_evidence_analyzer.py removed all reads bug Something isn't working
#70 opened Jan 15, 2024 by qinting
1
Aligner choice in viralintegration pipeline bug Something isn't working
#66 opened Oct 18, 2023 by chirayug
Add support for single end reads enhancement New feature or request
#64 opened Aug 22, 2023 by alyssa-ab v1.0.0
@alyssa-ab
Add subworkflows enhancement New feature or request
#58 opened Mar 27, 2023 by alyssa-ab
5 tasks done
v1.0.0
1
@alyssa-ab
Add viRNAtrap to pipeline enhancement New feature or request
#56 opened Feb 13, 2023 by allaway
Processes to turn into a subworkflow
#53 opened Jan 24, 2023 by edmundmiller
2 tasks
@alyssa-ab
v1.0.0 Release Criteria enhancement New feature or request
#51 opened Jan 11, 2023 by edmundmiller
1 of 6 tasks
v1.0.0
Update documentation and add example analysis enhancement New feature or request
#48 opened Dec 26, 2022 by lewynli
Look into failing md5sums on CI bug Something isn't working
#47 opened Dec 23, 2022 by edmundmiller
@edmundmiller
Update test data for nf-test/summary_report enhancement New feature or request
#37 opened Nov 16, 2022 by alyssa-ab
1 of 2 tasks
@alyssa-ab
2
Replace bamsifter with deepTools bamCoverage enhancement New feature or request
#25 opened Jul 14, 2022 by edmundmiller
Use CTAT singularity image enhancement New feature or request
#21 opened Jun 29, 2022 by edmundmiller
@edmundmiller
1
Add MetaPhlAn 3.0 module enhancement New feature or request
#2 opened Apr 22, 2022 by allaway
@alyssa-ab
1
ProTip! no:milestone will show everything without a milestone.
0