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Insights: nf-core/rnaseq
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1 Release published by 1 person
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3.19.0 nf-core/rnaseq v3.19.0 - Tungsten Turtle
published
Jun 10, 2025
5 Pull requests merged by 2 people
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back to dev + nft-utils 0.0.4
#1568 merged
Jun 10, 2025 -
Dev -> Master for 3.19.0
#1564 merged
Jun 10, 2025 -
Prerelease 3.19.0 fixes
#1567 merged
Jun 10, 2025 -
Improve reproducibility with Conda
#1565 merged
Jun 9, 2025 -
Version bumps ahead of 3.19.0 release
#1563 merged
Jun 6, 2025
4 Pull requests opened by 4 people
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Update to Nextflow 25.04
#1566 opened
Jun 9, 2025 -
Correct typos in rnaseq DE analysis docs
#1569 opened
Jun 10, 2025 -
issue #1570 show only umi_dedup.sorted.log in multiqc report
#1571 opened
Jun 17, 2025 -
[GH-1572] Fix salmon.merged.SummarizedExperiment.rds name collision
#1573 opened
Jun 20, 2025
1 Issue closed by 1 person
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Directive `process.shell` is failing with `nextflow version 25.04.2.5947`
#1562 closed
Jul 3, 2025
8 Issues opened by 7 people
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Update Mus musculus default GTF
#1579 opened
Jul 2, 2025 -
RSEM reference not passed to rsem-calculate-expression
#1578 opened
Jun 26, 2025 -
Enable extra flag which for BBSplit usemodulo set to True
#1577 opened
Jun 23, 2025 -
Optimize configuration for lightweight run to get the salmon counts
#1576 opened
Jun 23, 2025 -
ERROR ~ Workflow `RNASEQ` declares 18 input channels but 0 were given
#1575 opened
Jun 21, 2025 -
Unknown configuration profile: 'singularity'
#1574 opened
Jun 21, 2025 -
publishDir name collision for salmon.merged.SummarizedExperiment.rds
#1572 opened
Jun 20, 2025 -
mixture of umi stats in multiqc report
#1570 opened
Jun 17, 2025
2 Unresolved conversations
Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.
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`getTrimGaloreReadsAfterFiltering` function fails to extract filtered read count from TrimGalore log
#1557 commented on
Jun 22, 2025 • 0 new comments -
allow integer sample names
#1421 commented on
Jun 17, 2025 • 0 new comments