10000 Issues · nf-core/scrnaseq · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content

Issues: nf-core/scrnaseq

Beta
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

61 Open 141 Closed
61 Open 141 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Replace custom gtf filter code with nf-core module quality & consistency improve quality and reduce maintenance burden
#465 opened Apr 24, 2025 by grst
@nictru
Error running cellrangerarc workflow with 10x Multiome data bug Something isn't working
#463 opened Apr 23, 2025 by maggiebr0wn
3
Inquiry about Parameters for snRNA-seq Analysis
#462 opened Mar 31, 2025 by Yaxiong293
Use different json schemas for different aligners quality & consistency improve quality and reduce maintenance burden
#461 opened Mar 31, 2025 by grst
1
no exit code for CONCAT_H5AD jobs bug Something isn't working
#460 opened Mar 29, 2025 by nick-youngblut
4
Support for 10x v3.1 chemistry enhancement New feature or request
#457 opened Mar 26, 2025 by mossjacob
1
MultiOmeGEX on GCP=> no space left on device bug Something isn't working
#456 opened Mar 25, 2025 by nick-youngblut
14
docs on cellranger_index path enhancement New feature or request
#455 opened Mar 25, 2025 by nick-youngblut
3
JSON schema: Scrnaseq
#454 opened Mar 24, 2025 by lee-t
12 of 15 tasks
@abartlett004
Trimming enhancement New feature or request
#450 opened Mar 18, 2025 by milos7250
17
Cellranger must have input from fasta and gtf file bug Something isn't working
#449 opened Mar 13, 2025 by wzheng0520
1
Cellranger multi returning empty barcodes.tsv.gz and matrix.mtx.gz bug Something isn't working
#448 opened Mar 13, 2025 by ninamurrell
ANNDATA_BARCODES terminates with Missing output file(s) *.h5ad expected by process bug Something isn't working
#431 opened Feb 16, 2025 by fbnrst
NFCORE_SCRNASEQ:SCRNASEQ:SCRNASEQ_ALEVIN:SIMPLEAF_INDEX (Mes_genes.gtf)` terminated with an error exit status (1 bug Something isn't working
#413 opened Dec 31, 2024 by sajjadasaf
8
Automatically adapt the behavior of the cellrangermulti pipeline based on the presence of VDJ data in the samplesheet enhancement New feature or request
#400 opened Dec 4, 2024 by svigneau
Error for Smart-seq protocol bug Something isn't working
#398 opened Dec 4, 2024 by irenemaring
1
Cellranger v9 enhancement New feature or request
#397 opened Dec 3, 2024 by marcus-tutert
@fmalmeida
8
NFC…_SCRNASEQ:SCRNASEQ:MULTIQC not completing or taking an extremely long time bug Something isn't working
#395 opened Nov 16, 2024 by ohsumit
Cannot use single-end reads. Error: Missing required value: fastq_2 enhancement New feature or request
#394 opened Nov 13, 2024 by melissamlwong18
5
Check that indices can be specified as expected bug Something isn't working
#393 opened Nov 7, 2024 by grst
7
MuData output for multiomics data enhancement New feature or request
#392 opened Nov 7, 2024 by grst
Add auto chemistry detection for solving mixture of 10X scRNA-Seq chemistries (alevin, kallisto, star) enhancement New feature or request
#388 opened Oct 31, 2024 by wzheng0520
2
Update documentation for other technologies documentation enhancement New feature or request
#386 opened Oct 28, 2024 by LeonHafner
1 of 2 tasks
1
@nictru
cellranger multi => MTX_TO_H5AD: input file name collision bug Something isn't working cellranger-multi
#383 opened Oct 17, 2024 by nick-youngblut
2
CellRanger Multi => add combined h5ad files in mtx_conversions enhancement New feature or request
#378 opened Oct 8, 2024 by nick-youngblut
1
ProTip! What’s not been updated in a month: updated:<2025-04-05.
0