8000 merge the dev to master to 2.0 version release by jianhong · Pull Request #86 · nf-core/hicar · GitHub

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merge the dev to master to 2.0 version release#86

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jianhong wants to merge 203 commits intomasterfrom

Commits on May 16, 2022

Template update for nf-core/tools version 2.4
nf-core-bot
committed

Commits on Jun 8, 2022

Commits on Jun 24, 2022

fix the issue of multiqc_config file
jianhong
committed

Commits on Jul 6, 2022

fix a issue in README.
jianhong
committed

Commits on Jul 12, 2022

add TAD, AB compartments, APA analysis
jianhong
committed

Commits on Aug 9, 2022

Commits on Aug 11, 2022

re-orgnize the juicer tools modules.
jianhong
committed

Commits on Aug 12, 2022

add multiple scripts for homer
jianhong
committed

Commits on Aug 17, 2022

update scripts for hicdcplus
jianhong
committed

Commits on Aug 22, 2022

Commits on Aug 30, 2022

Template update for nf-core/tools version 2.5
nf-core-bot
committed

Commits on Sep 1, 2022

Template update for nf-core/tools version 2.5.1
nf-core-bot
committed

Commits on Oct 4, 2022

Template update for nf-core/tools version 2.6
nf-core-bot
committed

Commits on Oct 12, 2022

reformat modules.config;
jianhong
committed

Commits on Oct 26, 2022

update compartment, tad, apa tools.
jianhong
committed

Commits on Nov 7, 2022

add hicdcplus interaction caller.
jianhong
committed

Commits on Nov 21, 2022

update more differential methods.
jianhong
committed

Commits on Nov 28, 2022

update v4c and circos plot.
jianhong
committed

Commits on Nov 29, 2022

fix an issue of hicdcplus callloops
jianhong
committed

Commits on Dec 1, 2022

output channels for debug.
jianhong
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Commits on Dec 3, 2022

add TFEA
jianhong
committed

Commits on Dec 6, 2022

fix multiple bugs in hicdcplus.
jianhong
committed

Commits on Dec 7, 2022

Commits on Dec 8, 2022

Template update for nf-core/tools version 2.7.1
nf-core-bot
committed

Commits on Dec 14, 2022

Commits on Dec 15, 2022

fix the read_csv error for MAPS.py
jianhong
committed

Commits on Dec 16, 2022

Commits on Dec 18, 2022

fix peakachu.
jianhong
committed

Commits on Jan 10, 2023

Commits on Jan 19, 2023

Commits on Jan 20, 2023

change local cooler modules to nf-core cooler modules.
jianhong
committed

Commits on Jan 24, 2023

Commits on Jan 25, 2023

fix the channel re-use issue for juicebox.
jianhong
committed

Commits on Jan 26, 2023

Commits on Jan 27, 2023

Commits on Feb 1, 2023

Commits on Feb 2, 2023

Commits on Feb 3, 2023

fix the bedgraph file format output by find_hic_compartments.nf.
jianhong
committed

Commits on Feb 6, 2023

Commits on Feb 10, 2023

Commits on Feb 15, 2023

adjust callpeak resource;
jianhong
committed

Commits on Feb 16, 2023

fix the coordinates bug in diffhicar by edger
jianhong
committed

Commits on Feb 17, 2023

Commits on Feb 18, 2023

Commits on Feb 23, 2023

fix the negative width value for trimbedgraph.
jianhong
committed

Commits on Feb 27, 2023

Commits on Feb 28, 2023

Commits on Mar 1, 2023

add the possibility to subsample to balance the input reads
jianhong
committed

Commits on Mar 2, 2023

update circos plot
jianhong
committed

Commits on Mar 3, 2023

update circos plots for homer
jianhong
committed

Commits on Mar 6, 2023

Commits on Mar 15, 2023

Commits on Apr 6, 2023

fix the issue of dot in group name for APA plot.
jianhong
committed

Commits on Apr 19, 2023

Commits on Apr 24, 2023

Commits on Apr 25, 2023

update cooltools version;
jianhong
committed

Commits on Apr 27, 2023

Commits on Apr 28, 2023

Commits on May 1, 2023

update modules;
jianhong
committed

Commits on May 3, 2023

adjust the pipeline controlers;
jianhong
committed

Commits on May 11, 2023

Merge pull request #84 from jianhong/dev
maxulysse
authored

Commits on May 16, 2023

Commits on May 17, 2023

remove the memory setting for samtools sort until the bug be fixed.
jianhong
committed

Commits on May 18, 2023

Commits on May 23, 2023

temporary fix until the official update.
jianhong
committed

Commits on Jun 12, 2023

use local samtools/sort instead of nf-core/samtools/sort to avoid the memory issue;
jianhong
committed

Commits on Jun 15, 2023

update the change log file.
jianhong
committed

Commits on Jun 16, 2023

Merge pull request #85 from jianhong/dev
sateeshperi
authored

Commits on Jun 30, 2023

Template update for nf-core/tools version 2.9
nf-core-bot
committed

Commits on Jul 6, 2023

fix a type and remove unused codes for getscale.
jianhong
committed

Commits on Jul 11, 2023

remove the duplicated input plugins.
jianhong
committed

Commits on Jul 12, 2023

Commits on Jul 13, 2023

Commits on Jul 17, 2023

Commits on Jul 18, 2023

Commits on Jul 19, 2023

Merge pull request #96 from jianhong/dev
jianhong
authored

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