Stars
a simple python script to generate a geographical map of my collaborations based on scival/scopus metrics
IDEIS is a software for CD45 isoform detection in single-cell data.
Single-cell immune repertoire trajectory analysis in R
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identify specificity groups in the T cell receptor repertoire base…
Fast and accurate in silico inference of HLA genotypes from RNA-seq
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Package to call MHCnuggets from R, to predict MHC-I and MHC-II epitopes
An interpretable and flexible deep learning framework for single-T cell transcriptome and receptor analysis
Methods to discover gene programs on single-cell data
WES HLA Typing based on multiple alternative tools
HLA-TAPAS pipeline for HLA association and fine-mapping studies
A model that can identify the closest TCR matches, as well as antigen and receptor binding. This can be used to associate TCRs with diseases and antigens
Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
TCGA Pathology Reports in Machine Readable Text
A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.
A set of functions built into an R package for examining HLA diversity