8000 GitHub - natmurad/amplicon16S: Analysis for amplicon data

More Web Proxy on the site http://driver.im/

Name		Name	Last commit message	Last commit date
Latest commit History 12 Commits
RScripts		RScripts
pyScripts		pyScripts
qiimePreprocessing		qiimePreprocessing
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md

Repository files navigation

🦠 Amplicon 16S

qiime2.sh

Preprocess
Quality control & filtering
Assign taxonomy
Diversity analysis
Phylogenetic tree

Create visualizations

R - qiimer2, phyloseq & metagenomeSeq

Sample composition plots
Alpha & Beta diversity
Differential abundance analysis (for zero inflated data)

Python - Microbiome gene set enrichment

Microbiome set enrichment analysis with MSEA
Pathways enrichment analysis with GSEApy

About

Analysis for amplicon data

metagenomics amplicon 16s phyloseq qiime2 microbiome-workflow

Report repository

Releases

No releases published

Packages

No packages published

Languages

0