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Whole cell model of E. coli implemented with Vivarium

Jupyter Notebook 21 9 Updated Jun 26, 2025

The SPIFFE Runtime Environment

Go 1,977 511 Updated Jun 27, 2025
1 Updated Mar 3, 2022

Bootstrap Kubernetes the hard way. No scripts.

44,718 14,964 Updated Apr 10, 2025

Terraform module for creating Kubernetes cluster running on Container Linux by CoreOS in an AWS VPC

HCL 719 145 Updated Feb 27, 2018

A small client application that uses the Duo Labs EFIgy API to inform you about the state of your Mac EFI firmware

Python 511 39 Updated Dec 17, 2021

Virtual Cell integration for ImageJ ** MOVED: https://github.com/virtualcell/vcell

Java 2 Updated Oct 20, 2017

Virtual Cell solvers

C 6 6 Updated Nov 13, 2024

implementation of ImageDatasetService thrift interface (optionally used by VCell if separately installed)

Java 2 Updated May 6, 2024

Virtual Cell Framework

Java 85 20 Updated Jun 27, 2025

OpenVnmrJ. Build tools and instructions are at ovjTools.

C 34 15 Updated Apr 17, 2025

Snoopy Command Logger is a small library that logs all program executions on your Linux/BSD system.

C 1,259 158 Updated Oct 24, 2024

Website for personal collection and previewing of LaTeX templates. Presented with Python/Jinja2.

TeX 364 67 Updated Mar 13, 2025

Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

Java 143 126 Updated Aug 22, 2018

Google Docs content parser

CoffeeScript 24 6 Updated Jun 17, 2012

RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link belo…

Perl 66 26 Updated Nov 22, 2022

Fast Structural Variation Detection Toolbox

C++ 18 6 Updated Feb 16, 2015
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