Differential Network Connectivity Analysis
library(devtools)
devtools::install_github("montilab/ConAn", auth=<Personal Access Token>)
# For help with generating Personal Access Tokens
# https://help.github.com/articles/creating-a-personal-access-token-for-the-command-line/library(ConAn)
# Load test data
eset <- ConAn::eset
mod_list <- ConAn::mod_list
# Run ConAn
output <- ConAn::diff_conn(eset,
covariate = "subtype",
ctrl = "LumA",
cond = "Basal",
sim_type = "bootstrap",
iter = 5,
mean_correct = T,
cores = 1,
use_gpu = F,
mdc_type = "frac",
plotting = T)
# Plot data
output$plots