MokaGuys
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dnanexus_swiss_army_SNP_bcftools_filter
dnanexus_swiss_army_SNP_bcftools_filter PublicThis repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks
Shell 2
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automate_demultiplex
automate_demultiplex PublicScripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
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dnanexus_ED_cnv_calling
dnanexus_ED_cnv_calling PublicPerforms CNV calling using ExomeDepth.
Shell 1
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Repositories
- automate_demultiplex Public
Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
moka-guys/automate_demultiplex’s past year of commit activity - samplesheet_validator Public
A package to validate the formatting of Illumina SampleSheets and which notifies the user of any issues
moka-guys/samplesheet_validator’s past year of commit activity - bedmakerGUI Public
moka-guys/bedmakerGUI’s past year of commit activity - SNP_haplotyper Public
BASHer (BiAllellic SNP Haplotyper). This script filters and classifies SNPs for SNP Array data
moka-guys/SNP_haplotyper’s past year of commit activity - integrity_checking Public
Script to display a message box on the sequencers, with the goal of ensuring data is not lost should the data integrity check fail
moka-guys/integrity_checking’s past year of commit activity - pre_basher_filter Public
moka-guys/pre_basher_filter’s past year of commit activity
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