This is a work repository for HPC1b.
Contributors: Mihai Tomozeiu, Christian Reinhardt, Rafael Kung.
cd hpc/HYDRO_C/Src
make clean
make lmpi
cd ../Output
mpirun -n 16 ../Bin/hydro_lmpi -i ../Input/debug.nml
The binary is in HYDRO_C/Bin. You can use mpirun to run the program, or use HYDRO_C/Bin/run, which runs the command above.
We store the outputs from the simulations in ../Output/.
How to run a simulation:
There are in principe two possibilities:
- Allocate one (or more) nodes with salloc
- Submit a slurm batch job with sbatch
ZBOX:
- Allocate with salloc --partition=zbox and run with srun -n cores hydro_lmpi
- sbatch example-zbox.job (see example-zbox.job in this directory for details)
Important: Always compile with make lmpi and run hydro_lmpi!
Dora:
- Allocate with salloc (no partition) and run with aprun -n cores hydro_mpi
- sbatch example-dora.job (see example-dora.job in this directory for details and be sure to change ACCOUNT to uzh8)
Important: Always compile with make mpi and run hydro_mpi!
###proper call:
python multi_output_to_movies.py (path to output directory) (number of steps) (delay for movie frames)
###example:
python multi_output_to_movies.py ~/git/HPC_Hydro/HYDRO_C/Output/Input_sedov_100x10 10 100
.png and .mpg files will be created in the same directory as the analysed output files