8000 add hpacker reference to readme by thempel · Pull Request #115 · microsoft/bioemu · GitHub
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add hpacker reference to readme #115

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Merged
merged 2 commits into from
May 5, 2025
Merged

add hpacker reference to readme #115

merged 2 commits into from
May 5, 2025

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thempel
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@thempel thempel commented May 5, 2025

closes #113

@thempel thempel requested a review from a team May 5, 2025 12:42
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github-actions bot commented May 5, 2025

Summary

Summary
Generated on: 05/05/2025 - 13:01:40
Parser: Cobertura
Assemblies: 5
Classes: 22
Files: 22
Line coverage: 66.3% (1638 of 2469)
Covered lines: 1638
Uncovered lines: 831
Coverable lines: 2469
Total lines: 8200
Covered branches: 0
Total branches: 0
Method coverage: Feature is only available for sponsors

Coverage

src.bioemu - 79.2%
Name Line Branch
src.bioemu 79.2% ****
init.py
chemgraph.py 100%
convert_chemgraph.py 68.9%
denoiser.py 96.8%
get_embeds.py 71.2%
md_utils.py 85.8%
models.py 94.1%
run_hpacker.py 0%
sample.py 44.5%
sde_lib.py 84.3%
seq_io.py 100%
shortcuts.py 100%
sidechain_relax.py 77.4%
so3_sde.py 81%
structure_module.py 99%
utils.py 59.3%
src.bioemu.colabfold_setup -
Name Line Branch
src.bioemu.colabfold_setup **** ****
init.py
src.bioemu.hpacker_setup - 58.8%
Name Line Branch
src.bioemu.hpacker_setup 58.8% ****
init.py
setup_hpacker.py 58.8%
src.bioemu.openfold.np - 44%
Name Line Branch
src.bioemu.openfold.np 44% ****
protein.py 31.2%
residue_constants.py 60.7%
src.bioemu.openfold.utils - 50.1%
Name Line Branch
src.bioemu.openfold.utils 50.1% ****
rigid_utils.py 50.1%

@mgastegger mgastegger merged commit bec9ba8 into main May 5, 2025
4 checks passed
@mgastegger mgastegger deleted the timhempel/hpacker-citation branch May 5, 2025 15:11
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@mgastegger mgastegger mgastegger approved these changes

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Request ot add HPacker citation handle in README
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@thempel @mgastegger
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