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PPGpep Public
A software for creating pangenome graph for human genomes to improve peptide and protein identification from proteomic MS/MS data
Python UpdatedFeb 12, 2025 -
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MicroKPNN-MT Public
Multi-task microbiome-based knowledge-primed neural network
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DCTdomain Public
protein domain-level embedding via DCT for similarity search
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MetaProD-CRC Public
repository of proteins identified from proteomic datasets associated with colorectal cancer (CRC)
GNU General Public License v3.0 UpdatedJul 1, 2024 -
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MicroKPNN Public
knowledge-primed neural network for microbiome-based predictions
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MinPath Public
MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of th…
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PhyloMint Public
Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species
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crisprlong Public
tools for characterizing crispr arrays using long reads
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HAPiID Public
HAPiID (pronunciation: Happy ID). High Abundance Protein guided Metaproteomics identification
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