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Starred repositories

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Machine learning-based approach for the inference of gene regulatory networks from expression data.

C 82 34 Updated Sep 24, 2021

shiny app for WGCNA...

R 28 10 Updated Dec 6, 2024

This is a method to find telomeres and centromeres in plants.

40 6 Updated Jun 17, 2023
JavaScript 2,002 3,755 Updated May 20, 2025

This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees

R 15 8 Updated Jan 9, 2019

A guide to running MaxQuant in Linux

Python 32 11 Updated Feb 10, 2020

The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets

85 109 Updated Apr 10, 2025

deeplearning.ai(吴恩达老师的深度学习课程笔记及资源)

HTML 19,198 6,016 Updated Apr 29, 2022

Predicting TF sequence-specificity similarity with weighted alignments

Jupyter Notebook 13 7 Updated Oct 7, 2019

A Snakemake-based pipeline for gene mapping in Triticeae.

Python 11 1 Updated Mar 5, 2022

Companion code to my O'Reilly book "Flask Web Development", second edition.

Python 8,640 4,214 Updated Apr 6, 2025

基于 Flask 搭建的个人博客

JavaScript 10 4 Updated Sep 16, 2022

A curated list of awesome Flask resources and plugins

12,481 1,597 Updated Aug 18, 2024

A JavaWeb project implements student score management system with login and registration.

Java 3 4 Updated Mar 19, 2021

Student Score Management System realized by JDBC(Java+MySQL).

Java 3 2 Updated Jan 19, 2021

Legacy DBI interface for MySQL

C 209 107 Updated Apr 1, 2025

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

Python 405 182 Updated Mar 28, 2024

Analysis of Chromosome Conformation Capture data (Hi-C)

Nextflow 99 58 Updated Apr 30, 2025

a versatile and flexible pipeline for analysing different variants of ChIA-PET data

C++ 34 19 Updated Nov 25, 2024

ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster and visulization

Java 19 3 Updated Jul 19, 2024
HTML 53 38 Updated May 10, 2018

a collection of shiny app demonstrations 📊

R 61 19 Updated Aug 12, 2023

Shiny app for estimating farm potential pasture production

HTML 5 1 Updated Feb 19, 2020

ShinyCMS is an open-source CMS built in Ruby on Rails, with support for themes, plugins, and cloud hosting. (There is also a Perl version: www.github.com/denny/ShinyCMS)

Ruby 34 13 Updated May 19, 2025
Shell 1 Updated Jan 10, 2020

Computational Genomics with R 简体中文版

1 Updated Jul 11, 2020
Logos 10 3 Updated Dec 12, 2014

Tools for updating a genome assembly

Perl 5 2 Updated Jan 24, 2020
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