Stars
A command-line interface and Python library for generating AlphaFold3 input files.
Ultra-fast preprocessing and quality control for long-read sequencing data
Transcript assembly and quantification for RNA-Seq
A tool for calculation of pileup mappability for any genome of interest.
MEMO: MEM-based pangenome indexing for k-mer queries
Repository to Hold Code base for 'The Intra-Host Evolutionary Landscape And Pathoadaptation Of Persistent Staphylococcus aureus In Chronic Rhinosinusitis' Paper
Pipeline to detect HLA disruption from WES and RNAseq data
Analyse gene conversion events in immunoglobulin sequences
a genbank file browser using genome-view and biopython. Use example: http://ct.bork.embl.de/ctbrowser/
A high-performance BigWig and BigBed library in Rust
The LoCoHD metric for protein-protein structure comparison
Python module to manipulate and visualize minimap2's cs tag
Collection of scripts for computing PSI of junction clusters
R package and wrapper functions for identifying serial structural variations from genome assemblies
A replicable and modular benchmark for long-read RNA transcript quantification methods
Interactive graph visualizations with Python and HTML/CSS/JS.
Repo for collaboration on assembly of Erdman genome
A tool for drawing ANI clustermap between all-vs-all microbial genomes
A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses
Download FASTQ files from SRA or ENA repositories.