8000 matsumotosan (Shion Matsumoto) / Starred · GitHub
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Starred repositories

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Train ImageNet *fast* in 500 lines of code with FFCV

Python 142 35 Updated May 10, 2024

Code for the paper <Improving PINNs By Algebraic Inclusion of Boundary and Initial Conditions>

Jupyter Notebook 8 2 Updated Jul 31, 2024

A pytorch implementation of Fourier Analysis Networks (FAN)

Python 33 3 Updated Oct 9, 2024

A TensorFlow implementation of the Differentiable Neural Computer.

Python 2,517 441 Updated Jul 23, 2021

Powerful, efficient particle trajectory analysis in scientific Python.

C++ 292 51 Updated May 8, 2025

MDAnalysis is a Python library to analyze molecular dynamics simulations.

Python 1,422 710 Updated May 9, 2025

[TMLR 2023] Training and simulating MD with ML force fields

Python 112 14 Updated Oct 30, 2024

Pizza.py Toolkit

Python 9 6 Updated Aug 14, 2014
Jupyter Notebook 10 3 Updated Nov 11, 2024
Python 10 1 Updated Jun 24, 2024

Tool to read a logfile produced by LAMMPS into a simple python data structure with a get()-function providing the log data.

Python 61 8 Updated Mar 19, 2025

Pizza.py is a loosely integrated collection of tools written in Python, many of which provide pre- and post-processing capability for the LAMMPS molecular dynamics package.

Python 64 33 Updated Jul 16, 2021

Samples for CUDA Developers which demonstrates features in CUDA Toolkit

C 7,417 2,022 Updated May 5, 2025

Flexible Inference for Predictive Coding Networks in JAX.

Python 34 1 Updated Apr 7, 2025
Python 9 5 Updated Apr 30, 2025

Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

Python 160 58 Updated Jul 4, 2023

Pretrained deep learning models for Jax/Flax: StyleGAN2, GPT2, VGG, ResNet, etc.

Python 252 25 Updated Mar 21, 2025
Python 28 3 Updated Mar 13, 2025

LoRA for protein language models

Jupyter Notebook 37 2 Updated Jan 24, 2024

Synthesizing Graphics Programs for Scientific Figures and Sketches with TikZ

Python 1,214 60 Updated Apr 10, 2025

Research of a deep predictive coding model for unsupervised representation learning from video and audio data.

Jupyter Notebook 29 3 Updated Oct 18, 2019

A Python Implementation of Predictive Coding (Whittington & Bogacz 2017)

Python 15 4 Updated Jul 28, 2020

Predictive Coding JAX-based library

Python 56 9 Updated Apr 23, 2025

Towards Machine Unlearning Benchmarks: Forgetting the Personal Identities in Facial Recognition Systems

Jupyter Notebook 59 10 Updated Jan 21, 2025

Improve keyboard comfort and usability with advanced customization

Rust 4,936 176 Updated Apr 27, 2025

Training and inference code for ShEPhERD: Diffusing shape, electrostatics, and pharmacophores for bioisosteric drug design [ICLR 2025 oral]

Python 63 4 Updated Apr 20, 2025

An LLM-powered knowledge curation system that researches a topic and generates a full-length report with citations.

Python 24,261 2,146 Updated May 2, 2025

An example of using uv in Docker images

Dockerfile 336 37 Updated May 8, 2025
Jupyter Notebook 25 5 Updated May 23, 2024
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