Stars
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods
Open source implementation of AlphaFold3
Chai-1, SOTA model for biomolecular structure prediction
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
OPUS-Rota5: A Highly Accurate Protein Side-chain Modeling Method with 3D-Unet and RotaFormer
Official implementation of "Diffusion Model for Dense Matching" (ICLR'24 Oral)
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention. (NeurIPS 2024)
ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
PLMSearch enables accurate and fast homologous protein search with only sequences as input
Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models