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  • unified_structure_format Public

    A unified file format for all kinds of molecule structure. Including protein, small molecule, crystal.

    Jupyter Notebook 4 Updated Nov 30, 2024

  • ProMine Public

    2 MIT License Updated Nov 19, 2024

  • ProteinDesignLabs Public

    List of computational protein design research labs

    140 10 Updated Nov 13, 2024

  • ParaFold_dev Public

    ParaFold - under development

    Python 5 1 Updated Oct 30, 2024

  • MSA_Visualize Public

    Visualization of protein multiple sequence alignment.

    Jupyter Notebook 3 Updated Oct 30, 2024

  • Zuricho Public

    Personal website for Bozitao Zhong

    Updated Sep 25, 2024

  • zurtein Public

    A python package for protein sequence and structure analysis

    Python 4 Apache License 2.0 Updated Jul 29, 2024

  • zurplot Public

    Functions for creating figures

    Jupyter Notebook 1 Apache License 2.0 Updated Jun 19, 2024

  • AlphaFold3_Result_Visualize Public

    A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib

    Python 14 Updated May 20, 2024

  • alphafold3_facts Public

    Collection of trials, discussions, and tricks of AlphaFold3.

    3 Updated May 10, 2024

  • Zuricho.github.io Public

    Here's my blog & homepage, it's under construction now!

    Updated May 1, 2024

  • ParallelFold Public

    Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

    parallelization alphafold alphafold2 parafold
    Python 149 46 Updated Feb 25, 2024

  • FoldCraft Public

    Work in progress

    Python 6 Apache License 2.0 Updated Jan 15, 2024

  • chroma_pipeline Public

    Protein design pipeline for using Chroma, a protein structure generation model, for various tasks

    Python 4 Apache License 2.0 Updated Dec 17, 2023

  • My_Lab Public

    PTM forcefield development repo.

    Jupyter Notebook 1 1 Updated Sep 20, 2023

  • CV Public

    personal webpage for my curriculum vitae

    Updated Sep 20, 2023

  • Blade-Runner-Text-Game Public

    Python based blade runner text game/unfinished/roguelike/self-designed

    Python 1 Updated Feb 28, 2023

  • Ultimate_Dogma Public

    Personal website

    HTML Updated Sep 3, 2022

  • Free_Hand_Sketch Public

    Course project for SJTU CS420 Machine Learning course

    Jupyter Notebook Updated Jun 17, 2022

  • kagome_HVQE Public

    HVQE implementation of Kagome lattice. This project can calculate both ground state energy and exicted energies.

    Jupyter Notebook Apache License 2.0 Updated Apr 8, 2022

  • alphafold_wiki Public

    AlphaFold Unofficial Wiki

    alphafold alphafold2 evoformer parafold
    Jupyter Notebook Updated Mar 6, 2022

  • Knowledge Public

    Zuricho's personal knowledge base

    Jupyter Notebook Updated Jan 3, 2022

  • incaRNA Public

    incaRNA is a deep learning model to predict RNA secondary structure and model confidence

    Apache License 2.0 Updated Dec 28, 2021

  • Alphafold_local Public

    My guide to install Alphafold locally

    Python 7 4 MIT License Updated Aug 2, 2021

  • dnaplotlib Public

    Forked from VoigtLab/dnaplotlib

    DNA plotting library for Python

    Python MIT License Updated Jul 29, 2020

  • CCiC Public

    HTML Updated Mar 27, 2020

  • Old_Zuricho Public

    Personal website for Bozitao Zhong

    1 Updated Mar 9, 2020

  • deepmind-research Public

    Forked from google-deepmind/deepmind-research

    This repository contains implementations and illustrative code to accompany DeepMind publications

    Jupyter Notebook Apache License 2.0 Updated Mar 9, 2020

  • LaTeX-Typora-Theme Public

    A LaTeX-style for Typora. This theme makes Typora files look like LaTeX

    CSS 2 Updated Feb 9, 2020

  • gitalk.github.io Public

    Forked from gitalk/gitalk.github.io

    Gitalk is a modern comment component based on Github Issue and Preact.

    HTML Updated Feb 6, 2020