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Stars
General purpose utility related to GAF files
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
Code and analysis for genome-wide analysis of eSTRs in the GTEx cohort
lumpy: a general probabilistic framework for structural variant discovery
fairliereese / pyranges
Forked from pyranges/pyrangesPerformant Pythonic GenomicRanges
The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
This repository contains scripts used in the dRNA sequencing with Nanopore thesis.
Repository for reproducing results for lr-kallisto
PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
Tools to annotate haplotypes of MHC with gene and transcript information
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
bedtools getfasta / samtools faidx for pangenomes worth of FASTA files
A repository with code/scripts described in the pangenome SD project
Full-length transcriptome splicing and mutation analysis