Stars
Identify RNA editing sites from mapped bam files
RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.
A tool for the calculation of RNA-editing index for RNA seq data
Single-sequence protein-RNA complex structure prediction with biological language models
Metagenomic search for novel CRISPR-transposons
Machine learning for accurate identification and classification of CRISPR-Cas systems
A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
small utilities for manipulating .crispr files
A generalizable Cas9/sgRNA prediction model using machine transfer learning with small high-quality datasets
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
Nextflow workflow for analyzing CRISPR screen NGS data
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
model-based understanding of single-cell CRISPR screening
Scripts for processing and predicting CRISPR/Cas9-generated mutations
Comprehensive design of CRISPR gRNAs for nucleases and base editors
CRISPR NGS data analysis and visualization pipeline
End-to-end guide design for CRISPR/Cas9 with machine learning
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as t…