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Stars
A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
Script for generating a binary alignment file in pseudo-FASTA fomat. Protein sequences from genomes are used as input.
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
Tools for generating single-cell gene expression data
PHATE dimensionality reduction method implemented in R
❗ This is a read-only mirror of the CRAN R package repository. Rmagic — MAGIC - Markov Affinity-Based Graph Imputation of Cells
Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.
Install and run scVelo pipeline under python3.10 environment.
A tool for scanning FASTA protein sequences against a library of Pfam HMMs
Predictor of GPI-anchors in proteins based on HMMs and SVMs
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
customizable pipeline to identify viral sequences from (meta)genomic data
The code for running the analysis component of CSI-Microbe