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End-to-end analysis of spatial multi-omics data
Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution
Deep probabilistic analysis of single-cell and spatial omics data
CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-friendly interface. The software uses segmented data from either …
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients
Genome modeling and design across all domains of life
getzlab / PhylogicNDT
Forked from broadinstitute/PhylogicNDTFork for adding Python 3/hg38 support to PhylogicNDT
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as t…
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
Nature machine intelligence-Stable Cox Regression for Survival Analysis under Distribution Shifts
R package for detecting doublets in single-cell RNA sequencing data
This repository contains the implementation of TILAb-score as described in the original paper.
Extension of SpatialExperiment with sf
Fusing Histology and Genomics via Deep Learning - IEEE TMI
Integrating histology and spatial transcriptomics - NeurIPS 2024