8000 GitHub - UlricE/Wright: Calculates Wright's coefficient of inbreeding, mean kinship, founder alleleles surviving from animals in a database.
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Calculates Wright's coefficient of inbreeding, mean kinship, founder alleleles surviving from animals in a database.

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UlricE/Wright

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Wright

This program calculates Wright's coefficient of inbreeding, using data from a database.

It also calculates mean kinship for each animal in a population.

Example:

wright -u mysql:uid=myusername:pwd=mypassword:db=mydatabase
-t register -i id -b birth -d dam_id -s sire_id
-c ic
-n "g2008 != ''" -k mk2008
-n "g2009 != ''" -k mk2009

This will first calculate the relationship matrix for all animals in the database. Then inbreeding coefficients will be stored for all animals. Finally two sets of mean kinships will be calculated and stored. Any number of calculations can be performed. Being able to do so is useful because the values change every time an animal is added or removed.

Parameter order is significant.

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Calculates Wright's coefficient of inbreeding, mean kinship, founder alleleles surviving from animals in a database.

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