Stars
Python implementation of Basic Local Alignment Search Tool (BLAST) , which is the core algorithm in sequence alignment for genomes.
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Accelerated BLAST compatible local sequence aligner.
PrimerServer2: a high-throughput primer design and specificity-checking platform
A versatile pairwise aligner for genomic and spliced nucleotide sequences
A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
Code for design of diagnostic PCR primers, and metabarcoding markers.
Scripts for DNA translation, RNA transcription, GC content calculations, percent composition & ATCG base count calculations in Python
Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction,…