This Python package provides a collection of tools for people with questions in the realm of structural systems biology. The main goals of this package are to:
- Provide an easy way to map proteins to sequences and structures
- Directly link structures to genome-scale SBML models
- Prepare structures for downstream analyses, such as their use in molecular modeling software
- How can I determine the number of protein structures available for my list of genes?
- What is the best, representative structure for my protein?
- Where, in a metabolic network, do these proteins work?
- Where do popular mutations show up on a protein?
- How can I compare the structural features of an entire proteome?
- and more...
Read the documentation here.
Clone this repository to any location and then install it.
Cloning
git clone https://github.com/SBRG/ssbio.gitInstallation
First install NGLview:
pip install nglviewThen install ssbio:
cd ssbio
python setup.py develop --userUpdating
cd ssbio
git pullUninstalling
pip uninstall ssbio