- Photosystem I (PSI) network analysis.
- Python code to cumpute excitation energy transfer between chlorophylls in PSI LHC supercomplex.
- This repository hosts python code to compute FRET rate and the network effect of the excitation energy transfer of PSI LHC supercomplex.
- The python code
Forster.pyanalyzes the Förster resonance energy transfer rate between chlorophylls. - The python code
k2t.pyanalyzes the Förster resonance energy transfer time between chlorophylls. - The python code
GF.pyanalyzes the generalized Förster energy transfer rate between pigment clusters.
Numpy
1 Computational analysis of FRET rates between Chlorophylls
Excuting Forster.py by python can cumpute FRET rates between Chlorophylls:
python3 Forster.py H_matrix_file spec_tmppath2 Calculate the energy transfer time
Excuting k2t.py by python can cumpute energy transfer time between Chlorophylls based on the energy transfer rate matrix obtained in the previous step:
python3 k2t.py k_filename t_filename filelistname3 Computational analysis of generalized Förster energy transfer rate between pigment clusters
Excuting GF.py by python can cumpute energy transfer rate between pigment clusters:
python3 FGF.py H_matrixfile Donor_atart Doner_end Accept_start Accept_end spectmp outdirCreated by @gaojun and @guojianping feel free to contact us!