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致虛極,守靜篤;萬物並作,吾以觀復。
☯️
致虛極,守靜篤;萬物並作,吾以觀復。

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Official repository for the Boltz-1 biomolecular interaction model

Python 1,812 284 Updated May 9, 2025

A toolkit for prokaryotic comparative genomics

Python 48 7 Updated Jan 23, 2025

BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.

184 7 Updated Apr 28, 2025

The official Meta Llama 3 GitHub site

Python 28,666 3,371 Updated Jan 26, 2025

Shiny for Python

Python 1,460 99 Updated May 1, 2025

Bio3D an HTML5 visualization tool for biological datasets

TeX 25 11 Updated May 31, 2020

A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantlab.org/bio3d

PostScript 23 7 Updated Apr 30, 2023

Shiny UI for the NGLVieweR package

R 11 3 Updated Nov 19, 2024
Jupyter Notebook 3 1 Updated Dec 2, 2024
Jupyter Notebook 2 1 Updated Oct 10, 2024

single cell Flux Estimation Analysis (scFEA) Try the below web server!

Jupyter Notebook 120 35 Updated Nov 10, 2023

Differentiable convex optimization layers

Python 1,920 173 Updated Dec 6, 2024

Inferring multi-modality dynamics for single cell genomics data

Jupyter Notebook 5 1 Updated Apr 17, 2025

A curated biochemical database that integrates and refines data from KEGG and ATLAS databases to support precise analyses of biochemical reaction data.

Python 8 1 Updated Mar 13, 2025
C++ 10 2 Updated Sep 12, 2023

Benchmarking code accompanying the release of `bioemu`

Python 26 2 Updated Apr 29, 2025

Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across Protein Families".

Python 17 3 Updated Nov 14, 2023

🦉 OWL: Optimized Workforce Learning for General Multi-Agent Assistance in Real-World Task Automation

Python 16,244 1,918 Updated May 7, 2025

Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations

Python 56 12 Updated Feb 12, 2025

PPI version of Pythia

Python 10 5 Updated Nov 21, 2024

Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning

Python 367 61 Updated May 7, 2025
Python 8 Updated Oct 23, 2024

Code for the paper "Network Information Dynamics Renormalization Group"

Jupyter Notebook 5 2 Updated Dec 8, 2024

An ontology of cell types

Makefile 169 53 Updated May 9, 2025

Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders

Python 170 17 Updated Jan 30, 2025
TypeScript 100 6 Updated May 4, 2025

Code for ICML 2023 paper, "PFGM++: Unlocking the Potential of Physics-Inspired Generative Models"

Python 372 34 Updated Sep 11, 2023

2 and 3-dimensional fluid simulation library in Rust.

Rust 592 33 Updated Feb 2, 2025
Python 109 8 Updated Dec 23, 2024
Jupyter Notebook 9 1 Updated Nov 20, 2024
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