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A compilation of useful graphics for Bioinformatics tasks in R an Perl.
R's data.table package extends data.frame:
Tidy data structures, summaries, and visualisations for missing data
RStudio add-in to make plots interactively with ggplot2
A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessible.
A Signature R package for the National Syndromic Surveillance Program (NSSP) at the Centers for Disease Control and Prevention (CDC). A collection of tools, classes and functions that supports the …
A drop-in replacement for dplyr, powered by DuckDB for speed.
Your AI second brain. Self-hostable. Get answers from the web or your docs. Build custom agents, schedule automations, do deep research. Turn any online or local LLM into your personal, autonomous …
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Fast, sensitive and accurate integration of single-cell data with Harmony
An interactive explorer for single-cell transcriptomics data
An R package providing extended biological annotations for the SomaScan Assay, a proteomics platform developed by SomaLogic Operating Co., Inc.
Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
Training requirements for joining projects