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@HassounLab

Hassoun Lab: Computational Systems + Synthetic Biology

Developing ANALYSIS + DESIGN tools to advance (re-)designing biology

Popular repositories Loading

  1. GNN-SOM GNN-SOM Public

    Site-of-Metabolsim prediction using Graph Neural Networks.

    Jupyter Notebook 15 2

  2. EPP EPP Public

    Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"

    Python 13 3

  3. ASAP-SML ASAP-SML Public

    ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning

    Jupyter Notebook 11 3

  4. BAM BAM Public

    Biotransformation-based annotation method

    Python 7

  5. PUMA PUMA Public

    Pathway Activity Analysis and Metabolite Annotation for Untargeted Metabolomics using Probabilistic Modeling

    Python 5

  6. ELP ELP Public

    Enzymatic Link Prediction

    Python 5

Repositories

Showing 10 of 18 repositories
  • JESTR1 Public

    Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data

    HassounLab/JESTR1’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Mar 25, 2025
  • OMG Public

    Optimized Molecular Generation (OMG) for de novo mass spectrum annotation

    HassounLab/OMG’s past year of commit activity
    Python 0 0 0 0 Updated Mar 24, 2025
  • MADGEN Public

    MASS-SPEC ATTENDS TO DE NOVO MOLECULAR GENERATION

    HassounLab/MADGEN’s past year of commit activity
    Python 4 0 0 0 Updated Mar 16, 2025
  • MDM Public

    Microbial Drug Metabolism (MDM) prediction

    HassounLab/MDM’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 21, 2025
  • PubChem-LLM-Retrieval Public

    This Github repository holds the supporting documents for the paper "Evaluation of search-enabled Pre-trained Large Language Models on retrieval tasks for the PubChem Database"

    HassounLab/PubChem-LLM-Retrieval’s past year of commit activity
    0 0 0 0 Updated Oct 21, 2024
  • BAM Public

    Biotransformation-based annotation method

    HassounLab/BAM’s past year of commit activity
    Python 7 0 0 0 Updated Sep 24, 2024
  • ESP Public

    ESP model

    HassounLab/ESP’s past year of commit activity
    Python 1 MIT 0 1 0 Updated May 3, 2024
  • Boost-RS Public

    Boosted Embeddings for Recommender Systems and its Application to Enzyme-Substrate Interaction Prediction

    HassounLab/Boost-RS’s past year of commit activity
    Python 5 MIT 2 0 0 Updated Mar 6, 2024
  • PROXIMAL2 Public

    PROXIMAL2 algorithm

    HassounLab/PROXIMAL2’s past year of commit activity
    Python 5 2 0 0 Updated Oct 9, 2023
  • EPP Public

    Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"

    HassounLab/EPP’s past year of commit activity
    Python 13 3 0 0 Updated Aug 7, 2023
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