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cogent3 Public
Forked from cogent3/cogent3Comparative Genomics Toolkit 3
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 13, 2025 -
ensembl_tui Public
Forked from cogent3/ensembl_tuiA new approach to obtaining local copies of ensembl data
Python Apache License 2.0 UpdatedJun 12, 2025 -
DiverseSeq Public
Forked from HuttleyLab/DiverseSeqTools for analysis of sequence divergence
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 12, 2025 -
PuningAnalysis Public
Puning Wang honours analysis project 2024
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gutils Public
utilities for biol3157
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 2, 2025 -
cogent3.github.io Public
Forked from cogent3/cogent3.github.ioContents for cogent3.org
Dockerfile UpdatedMay 23, 2025 -
cogent3-h5seqs Public
Forked from cogent3/cogent3-h5seqsh5py driver for cogent3 unaligned and aligned seqs data
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 12, 2025 -
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piqtree2 Public
Forked from iqtree/piqtreea python library that exposes features from iqtree2 - efficient software for phylogenomic inference
Python GNU General Public License v2.0 UpdatedMar 28, 2025 -
gav_blog Public
Blog content of Gavin Huttley
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MutationMotif Public
Forked from HuttleyLab/MutationMotifPython BSD 3-Clause "New" or "Revised" License UpdatedFeb 2, 2025 -
the-littlest-jupyterhub Public
Forked from jupyterhub/the-littlest-jupyterhubSimple JupyterHub distribution for 1-100 users on a single server
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 7, 2025 -
PhyLim Public
Forked from HuttleyLab/PhyLimPython project to validate a phylogenetic fitted models is within the limits of inference
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 3, 2024 -
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gbintk Public
Forked from metagentools/gbintk🌟🧬 GraphBin-Tk: Assembly graph-based metagenomic binning toolkit
Python GNU General Public License v3.0 UpdatedOct 15, 2024 -
scitrack Public
Forked from HuttleyLab/scitrackPython BSD 3-Clause "New" or "Revised" License UpdatedOct 8, 2024 -
app_template Public
Forked from cogent3/app_templateA template for creating cogent3 apps
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 18, 2024 -
MetaCoAG Public
Forked from metagentools/MetaCoAG🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
Python GNU General Public License v3.0 UpdatedJun 9, 2024 -
ConDiGA Public
Forked from metagentools/ConDiGA🗂️🧬 Contigs directed gene annotation for accurate protein sequence database construction in metaproteomics
Python MIT License UpdatedJun 3, 2024 -
GraphBin2 Public
Forked from metagentools/GraphBin2☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 7, 2024 -
sphinx-design Public
Forked from executablebooks/sphinx-designA sphinx extension for designing beautiful, screen-size responsive web components.
Python MIT License UpdatedFeb 28, 2023 -
VStrains Public
Forked from metagentools/VStrainsVStrains is a de novo approach for reconstructing strains from viral quasispecies.
Python MIT License UpdatedFeb 9, 2023 -
DemoProject Public template
Initial project using click
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GraphBin Public
Forked from metagentools/GraphBinGraphBin: Refined binning of metagenomic contigs using assembly graphs
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 23, 2022 -
rich Public
Forked from Textualize/richRich is a Python library for rich text and beautiful formatting in the terminal.
Python MIT License UpdatedOct 6, 2021 -
nbgrader Public
Forked from jupyter/nbgraderA system for assigning and grading notebooks
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 11, 2021 -
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metaDigitise Public
Forked from daniel1noble/metaDigitiseDigitising functions in R for extracting data and summary statistics from figures in primary research papers
R UpdatedMar 31, 2021 -