Stars
An online version of Secret Hitler, a social deduction board game.
MinHash, LSH, LSH Forest, Weighted MinHash, HyperLogLog, HyperLogLog++, LSH Ensemble and HNSW
A library for efficient similarity search and clustering of dense vectors.
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important appl…
Code for the paper "Putting a bug in ML: The moth olfactory network learns to read MNIST", by CB Delahunt and JN Kutz
Materials to prepare for the PhD qualifying examinations in CSE, Penn State
OmniXAI: A Library for eXplainable AI
Example of "biological" learning for MNIST
Foundation Models for Genomics & Transcriptomics
PINDER: The Protein INteraction Dataset and Evaluation Resource
Pangolin is a deep-learning method for predicting splice site strengths.
Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
A learning algorithm for locality-sensitive bucketing functions
Model interpretability and understanding for PyTorch
Biological foundation modeling from molecular to genome scale
Collection of advice for prospective and current PhD students
A curated list of topological deep learning (TDL) resources and links.
Code for our NeurIPS 2022 paper
A Deep Learning Python Toolkit for Healthcare Applications.
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2