[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content
@EBI-Metagenomics

MGnify

MGnify (formerly known as EBImetagenomics) is a free resource for the assembly, analysis, archiving and browsing all types of microbiome derived sequence data

Pinned Loading

  1. pipeline-v5 pipeline-v5 Public

    This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

    HTML 22 20

  2. emg-viral-pipeline emg-viral-pipeline Public

    VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

    Python 128 16

  3. genomes-catalogue-pipeline genomes-catalogue-pipeline Public

    MGnify genome analysis pipeline

    Python 101 21

  4. mgnify-web mgnify-web Public

    Parent repo for MGnify's (EMBL-EBI's metagenomics platform) API and web client. Designed for local development.

    Python 5

  5. notebooks notebooks Public

    MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)

    Jupyter Notebook 14 10

  6. genome_uploader genome_uploader Public

    Python script to upload bins and MAGs to ENA (European Nucleotide Archive)

    Python 21 4

Repositories

Showing 10 of 173 repositories
  • ena-api-handler Public
    EBI-Metagenomics/ena-api-handler’s past year of commit activity
    Python 1 Apache-2.0 2 0 2 Updated Dec 3, 2024
  • ebi-metagenomics-client Public

    This repos contains the MGnify web client

    EBI-Metagenomics/ebi-metagenomics-client’s past year of commit activity
    TypeScript 4 1 0 10 Updated Dec 3, 2024
  • mett-dataportal Public
    EBI-Metagenomics/mett-dataportal’s past year of commit activity
    TypeScript 0 0 0 0 Updated Dec 3, 2024
  • miassembler Public
    EBI-Metagenomics/miassembler’s past year of commit activity
    Nextflow 1 Apache-2.0 0 0 3 Updated Dec 3, 2024
  • MAG-to-assembly-pipeline Public

    Nextflow pipeline that wraps the assembly-MAG linking script

    EBI-Metagenomics/MAG-to-assembly-pipeline’s past year of commit activity
    0 0 0 1 Updated Dec 3, 2024
  • hmmer3 Public

    HMMER (version 3) related projects

    EBI-Metagenomics/hmmer3’s past year of commit activity
    C 1 0 0 0 Updated Dec 3, 2024
  • taxdb_generation_nf Public
    EBI-Metagenomics/taxdb_generation_nf’s past year of commit activity
    Perl 0 Apache-2.0 0 0 1 Updated Dec 3, 2024
  • EukCC Public

    Tool to estimate genome quality of microbial eukaryotes

    EBI-Metagenomics/EukCC’s past year of commit activity
    Python 35 GPL-3.0 9 25 0 Updated Dec 2, 2024
  • MGnifyR Public

    R package for searching, downloading and analysis of EBI MGnify metagenomics data

    EBI-Metagenomics/MGnifyR’s past year of commit activity
    R 19 Artistic-2.0 10 4 0 Updated Dec 2, 2024
  • deciphon Public

    Deciphon related projects

    EBI-Metagenomics/deciphon’s past year of commit activity
    C 0 0 0 0 Updated Dec 2, 2024
View all repositories

Most used topics

Loading…