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Starred repositories
A scalable generative AI framework built for researchers and developers working on Large Language Models, Multimodal, and Speech AI (Automatic Speech Recognition and Text-to-Speech)
Model Context Protocol (MCP) server designed for LLMs to interact with Obsidian vaults. Provides secure, token-aware tools for seamless knowledge base management through a standardized interface.
Model Context Protocol Servers
Specification and documentation for the Model Context Protocol
Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)
All the GRE learning materials you will need
FlashMLA: Efficient MLA decoding kernels
Code for the paper "Causal Transformer for Estimating Counterfactual Outcomes"
Official repository for the Boltz-1 biomolecular interaction model
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
List of computational protein design research labs
R package with HCUP Clinical Classification Software (CCS) mapping to common diagnosis and procedure codes
Incorporation of conformational space profile into molecular representation learning, and its application to drug discovery, including virtual screening, target identification, and QSAR.
A Python library to extract tabular data from PDFs
Structure prediction of alternative protein conformations
Code for BEHRT: Transformer for Electronic Health Records
A Unified Language Model to Integrate Biomedical Text with 2D and 3D Molecular Representations
A deep learning model for small molecule drug discovery and cheminformatics based on SMILES