scHub is a python package for single-cell omics data analysis, which is compatible with the ecosystem of scverse, e.g. scanpy and scVI. Currently, scHub collects the methods for single-cell studies developed by CompCy lab at UNC-Chapel Hill.
Please refer to the documentation. In particular, the
You need to have Python 3.8 or newer installed on your system. If you don't have
Python installed, we recommend installing it with Anaconda.
There are several alternative options to install scHub:
- Install the latest development version:
pip install git+https://github.com/CompCy-lab/scHub.git@main- Install the latest release of
scHubfrom PyPI:
pip install scHubSee the changelog.
For questions and help requests, or you found a bug, you can reach out in the issue tracker. We will check the GitHub issues regularly, and respond the message at our earliest convenience.