Stars
Plotting and visualization tools for EEG data, with additional Unfold.jl regression ERP methods. Based on the visualization libraries Makie.jl and AlgebraOfGraphics.jl
Simulate EEG / ERP data with overlap, non-linear effects, multiple regression
Neuroimaging (EEG, fMRI, pupil ...) regression analysis in Julia
A fast, feature-rich static code analyzer & language server for Python
An extremely fast Python linter and code formatter, written in Rust.
Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level…
Materials for AI in Cognitive Neuroscience Summer School, 2024
Repository for the textbook 'Improving Your Statistical Inferences' by Daniel Lakens
This package allows R code chunks, which can be tested for reproducibility.
A small python package to access publicly available brain atlases in a BIDS-Atlas compliant manner.
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
Template repo for bootstrapping and maintaining SOPs (Standard operation procedures)
A Blender add-on to bring animations from NEURON
Load 3D meshes from neuroanatomy atlases into Blender via brainglobe API
VB17 Sequence Protocols. A collection of pdfs of sequence protocols that where used in my publications. Mostly VASO, Multi-echo, SMS, 3D-EPI, low resolution up to sub-millimeter fMRI
Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising
Stand alone fMRI software suite for layer-fMRI analyses.
Code for preprocessing data for the Naturalistic viewing EEG FMRI data release from NKI
Brain Imaging Data Structure (BIDS) Specification
A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
Python (PsychoPy) Code for displaying custom visual stimuli for Fast Periodic Visual Stimulation (FPVS, a.k.a Steady-State Visual Evoked Potentials, SSVEP). Designed to be used in the context of el…
Simple directory structure for describing how to run psychopy experiments off of a USB stick
A psychopy version of Lowa Gambling Task (LGT)
Psychomotor vigilance test created in PsychoPy