8000 Problem with installing MIRTK · Issue #783 · BioMedIA/MIRTK · GitHub
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parinazbabaee opened this issue Aug 11, 2022 · 3 comments
Open

Problem with installing MIRTK #783

parinazbabaee opened this issue Aug 11, 2022 · 3 comments

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@parinazbabaee
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parinazbabaee commented Aug 11, 2022 •
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Hello,

Please help me to solve the problem with MIRTK using "make -j 8". I am using macOS 12.5. I followed the installation steps based on this page "https://mirtk.github.io/install.html". configuration and generation were done!

Following is the error that I get from make -j 8:

/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/usr/include/math.h:155:5: note: expanded from macro 'isfinite'
( sizeof(x) == sizeof(float) ? _inline_isfinitef((float)(x))
^
In file included from /Users/parinazbabaeeghazvini/Documents/MIRTK/Packages/DrawEM/ThirdParty/ANTs/N4.cxx:15:
In file included from /usr/local/include/ITK-5.2/itkImageFileReader.h:24:
In file included from /usr/local/include/ITK-5.2/itkImageIOBase.h:30:
In file included from /usr/local/include/ITK-5.2/itkSymmetricSecondRankTensor.h:28:
In file included from /usr/local/include/ITK-5.2/itkMatrix.h:25:
/usr/local/include/ITK-5.2/vnl/vnl_matrix_fixed.hxx:787:37: error: expected unqualified-id
std::cerr << char(vnl_math::isfinite(this->data[i][ j]) ? '-' : '*');
^
/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/usr/include/math.h:155:5: note: expanded from macro 'isfinite'
( sizeof(x) == sizeof(float) ? __inline_isfinitef((float)(x))
^
In file included from /Users/parinazbabaeeghazvini/Documents/MIRTK/Modules/Common/src/Vtk.cc:22:
In file included from /Users/parinazbabaeeghazvini/Documents/MIRTK/Modules/Common/include/mirtk/Vtk.h:33:
In file included from /usr/local/include/vtk-9.2/vtkPolyData.h:66:
In file included from /usr/local/include/vtk-9.2/vtkPointSet.h:58:
In file included from /usr/local/include/vtk-9.2/vtkCellTypes.h:44:
In file included from /usr/local/include/vtk-9.2/vtkIdTypeArray.h:27:
In file included from /usr/local/include/vtk-9.2/vtkAOSDataArrayTemplate.h:38:
In file included from /usr/local/include/vtk-9.2/vtkGenericDataArray.h:443:
In file included from /usr/local/include/vtk-9.2/vtkGenericDataArray.txx:21:
/usr/local/include/vtk-9.2/vtkMath.h:2102:15: error: expected unqualified-id
return std::isinf(x);
^
/usr/local/include/math.h:160:5: note: expanded from macro 'isinf'
( sizeof(x) == sizeof(float) ? __inline_isinff((float)(x))
^
In file included from /Users/parinazbabaeeghazvini/Documents/MIRTK/Modules/Common/src/Vtk.cc:22:
In file included from /Users/parinazbabaeeghazvini/Documents/MIRTK/Modules/Common/include/mirtk/Vtk.h:33:
In file included from /usr/local/include/vtk-9.2/vtkPolyData.h:66:
In file included from /usr/local/include/vtk-9.2/vtkPointSet.h:58:
In file included from /usr/local/include/vtk-9.2/vtkCellTypes.h:44:
In file included from /usr/local/include/vtk-9.2/vtkIdTypeArray.h:27:
In file included from /usr/local/include/vtk-9.2/vtkAOSDataArrayTemplate.h:38:
In file included from /usr/local/include/vtk-9.2/vtkGenericDataArray.h:443:
In file included from /usr/local/include/vtk-9.2/vtkGenericDataArray.txx:21:
/usr/local/include/vtk-9.2/vtkMath.h:2115:15: error: expected unqualified-id
return std::isnan(x);
^
/usr/local/include/math.h:165:5: note: expanded from macro 'isnan'
( sizeof(x) == sizeof(float) ? __inline_isnanf((float)(x))
^
In file included from /Users/parinazbabaeeghazvini/Documents/MIRTK/Modules/Common/src/Vtk.cc:22:
In file included from /Users/parinazbabaeeghazvini/Documents/MIRTK/Modules/Common/include/mirtk/Vtk.h:33:
In file included from /usr/local/include/vtk-9.2/vtkPolyData.h:66:
In file included from /usr/local/include/vtk-9.2/vtkPointSet.h:58:
In file included from /usr/local/include/vtk-9.2/vtkCellTypes.h:44:
In file included from /usr/local/include/vtk-9.2/vtkIdTypeArray.h:27:
In file included from /usr/local/include/vtk-9.2/vtkAOSDataArrayTemplate.h:38:
In file included from /usr/local/include/vtk-9.2/vtkGenericDataArray.h:443:
In file included from /usr/local/include/vtk-9.2/vtkGenericDataArray.txx:21:
/usr/local/include/vtk-9.2/vtkMath.h:2128:15: error: expected unqualified-id
return std::isfinite(x);
^
/usr/local/include/math.h:155:5: note: expanded from macro 'isfinite'
( sizeof(x) == sizeof(float) ? __inline_isfinitef((float)(x))
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
11 errors generated.
make[2]: *** [Modules/Common/src/CMakeFiles/LibCommon.dir/Vtk.cc.o] Error 1
make[1]: *** [Modules/Common/src/CMakeFiles/LibCommon.dir/all] Error 2
20 errors generated.
make[2]: *** [Packages/DrawEM/ThirdParty/ANTs/CMakeFiles/N4.dir/N4.cxx.o] Error 1
make[1]: *** [Packages/DrawEM/ThirdParty/ANTs/CMakeFiles/N4.dir/all] Error 2
make: *** [all] Error 2

I appreciate your help for solving the issue,
Best,
Parinaz.
@vidhyadhar8
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Hi Parinaz,

I am also facing the same issue while installing on mac. did you find any work around for this?

Thanks,
Vidhy

@parinazbabaee
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parinazbabaee commented May 9, 2025 via email

@vidhyadhar8
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Can you provide what software you have moved to?

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