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@BCCDC-PHL

BC Centre for Disease Control Public Health Laboratory

The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.

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  1. ncov2019-artic-nf ncov2019-artic-nf Public

    Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow 4 1

  2. illumina-uploader illumina-uploader Public

    Watch for new files in Illumina sequencer and upload to remote server

    Python 3 1

  3. mpxv-artic-nf mpxv-artic-nf Public

    Nextflow 2 4

  4. covid-qc covid-qc Public

    Static site for displaying COVID-19 sequencing quality control data

    Clojure 5

Repositories

Showing 10 of 125 repositories
  • auspice Public Forked from nextstrain/auspice

    Web app for visualizing pathogen evolution

    BCCDC-PHL/auspice’s past year of commit activity
    JavaScript 0 AGPL-3.0 169 0 0 Updated May 8, 2025
  • plasmid-surgery Public
    BCCDC-PHL/plasmid-surgery’s past year of commit activity
    Python 1 0 0 0 Updated May 8, 2025
  • auto-hcv Public

    Automated genomic analysis of HCV sequence data

    BCCDC-PHL/auto-hcv’s past year of commit activity
    Python 0 MIT 1 0 0 Updated May 5, 2025
  • routine-nanopore-qc Public

    Routine sequence QC for nanopore data

    BCCDC-PHL/routine-nanopore-qc’s past year of commit activity
    Nextflow 0 0 1 1 Updated May 3, 2025
  • auto-routine-nanopore-qc Public
    BCCDC-PHL/auto-routine-nanopore-qc’s past year of commit activity
    Python 0 0 0 0 Updated May 3, 2025
  • its-nf Public
    BCCDC-PHL/its-nf’s past year of commit activity
    Python 0 0 0 0 Updated May 1, 2025
  • symlink-seqs Public

    Create fastq symlinks for selected samples in sequencer output directories based on several criteria

    BCCDC-PHL/symlink-seqs’s past year of commit activity
    Python 0 0 3 0 Updated Apr 29, 2025
  • bioinflow Public

    Nextflow pipeline for providing public health bioinfo.

    BCCDC-PHL/bioinflow’s past year of commit activity
    Nextflow 5 MIT 0 0 0 Updated Apr 27, 2025
  • auto-pangolin Public

    Automated lineage assignment of SARS-CoV-2 sequences with pangolin

    BCCDC-PHL/auto-pangolin’s past year of commit activity
    Python 0 0 0 0 Updated Apr 16, 2025
  • auto-ncov Public

    Automated genomic analysis of SARS-CoV-2 sequence data

    BCCDC-PHL/auto-ncov’s past year of commit activity
    Python 1 0 3 0 Updated Apr 16, 2025
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