Stars
Local version of the virus identification and analysis web server (tool set)
A community effort to create a shared resource for HMM-based RdRp discovery
A tool for adding taxonomic annotations to virus contigs, mapping reads to virus genomes and much more.
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
A listing of software, tools and databases useful for virome analysis
Vini2 / awesome-virome
Forked from shandley/awesome-viromeA listing of software, tools and databases useful for virome analysis
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein function.
Convert genbank files to a swath of other formats
Fungal bioActive compound Resistant Target Seeker (FunARTS)
A tool to create visual HTML reports from collections of CSV/TSV tables
Chimera: A Versatile Metagenomic Classification Tool
MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
A user-friendly tool to screen antimicrobial resistance in fungal genomes
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
Discovery of conserved gene clusters in multiple genomes
A list of interesting genome browser and genome visualization programs
An updated pipeline for pangenome investigation
Recovering genes from targeted sequence capture data
Automatically calculate phylogenetic trees from bacterial core genes
A workflow and scripts for large-scale antiSMASH analyses
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
Lightweight bioinformatics pipeline for microbial genome recovery