OpenMM workshop
If nglview does not show anything start jupyter-notebook with
jupyter notebook --NotebookApp.iopub_data_rate_limit=10000000If you have anaconda just run the following commands, otherwise download ANACONDA or miniconda (e.g see below).
bash install_workshop.shor type
source ~/anaconda3/bin/activate
conda create -n OPS -c omnia openpathsampling nbconvert notebook &
-c conda-forge jupyter_nbextensions_configurator jupyter_contrib_nbextensions
conda activate OPS
# activate javascript
jupyter nbextension install widgetsnbextension --py --sys-prefix
jupyter-nbextension enable --py --sys-prefix widgetsnbextension
jupyter-nbextension enable nglview --py --sys-prefixor us the conda_env.yml with
source ~/anaconda3/bin/activate
conda env create -n OPS -f conda_env.yml
conda activate OPS
echo $CONDA_PREFIX
# activate javascript
jupyter nbextension install widgetsnbextension --py --sys-prefix
jupyter-nbextension enable --py --sys-prefix widgetsnbextension
jupyter-nbextension enable nglview --py --sys-prefix# For Mac OS X, substitute `MacOSX` for `Linux` below
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash -b ./Miniconda3-latest-Linux-x86_64.sh -p $HOME/minicondajupyter-nbconvert --to slides --post serve Untitled.ipynb