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Atemia/README.md

Joseph Atemia

Bioinformatics Researcher | PhD in Bioinformatics | Computational Biologist

👋 Hi there! I’m a passionate bioinformatics researcher with a strong background in computational biology, next-generation sequencing (NGS), and data visualization. I recently completed my PhD at Heinrich Heine University Düsseldorf, where I focused on leveraging bioinformatics tools to study genetic diversity and adaptation in teosinte, a wild maize relative. I’m now seeking new challenges to apply and expand my expertise in a dynamic research or industry setting.

🔬 Research Interests:

  • NGS Genomics
  • Population genetics and phylogenetics
  • Genome-wide association studies (GWAS)
  • RNA-Seq data processing and analysis
  • Development of bioinformatics tools for genomics
  • Machine Learning

🛠️ Technical Skills

  • Programming Languages: Python, R, Bash
  • Computing Tools: SLURM, Sun Grid Engine, Git
  • NGS Analysis: Whole genome/transcriptome alignment, assembly, annotation, variant calling
  • Statistical Analysis: Linear/mixed models, classical statistics, multivariate analysis
  • Benchwork: DNA/RNA extraction, quantification, PCR amplification

📫 Get in Touch


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  1. FMB_genetic_diversity FMB_genetic_diversity Public

    The repository contains codes that I used for STRUCTURE analyses, Phylogenetic inference and PCA during MSc project for genetic diversity assessment of eastern Africa finger millet blast fungus.

    Shell 1

  2. PythonMiniProject-Atemia PythonMiniProject-Atemia Public

    PythonMiniProject-Atemia created by GitHub Classroom

    Jupyter Notebook 1

  3. usadellab/GeneExpressionPlots usadellab/GeneExpressionPlots Public

    A Javascript based tool to visualize gene expression over a custom discrete variable (e.g. time) and grouped by another (e.g. tissue or genotype).

    TypeScript 7 4

  4. usadellab/prot-scriber usadellab/prot-scriber Public

    Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or D…

    Rust 6 5

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