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Source code of the MultiBP framework
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Marcoacfbr/MultiBP
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MASA-CUDAlign extension What is it? =========== The MASA-CUDAlign extension is used with the MASA architecture to align DNA sequences of unrestricted size with the Smith-Waterman algorithm combined with Myers-Miller. It uses the NVIDIA CUDA platform for accelerating the computation time. This project is published under the GPLv3 License. Version ======= The MASA-CUDAling extension follows the same version of the MASA project contained in the libs/masa-core sub directory. Compiling ========= The simplest way to compile the project is to use the following commands: $ ./configure $ make More information can be found in the INSTALL file. Executing ========= The default command line parameters are inherited from the MASA library, but new parameters were added by the MASA-CUDAlign extension. You can see all the parameters passing the --help argument. Downloading =========== The source code of this project can be downloaded from the git repository: $ git clone <REPOSITORY> Before compiling the project, execute the autoreconf script: $ autoreconf --force --install
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