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@MRCBSU

Medical Research Council Biostatistics Unit at the University of Cambridge

Welcome 👋

The Medical Research Council (MRC) Biostatistics Unit (BSU)'s mission is to promote the development and application of innovative statistical methods in the health sciences for the improvement of health. This github organisation exists to collate software and code for unit members and the wider community. These open source, CRAN (or bioconductor) compliant R packages have been forked to this repo for archiving and discoverability reasons. Issues and Pull Requests should still be directed to the repo from which the fork emmenates.

Open code to support open science

As well as software packages, we also provide code used in applied analyses to support open and reproducible research. Some of the github pages where this happens are listed below:

  • dose-finding includes code from DART
  • chr1swallace has a mixture of software packages and open code (those repositories are often named "*-paper")

Forked Repositories

For the full list of repositories, click "Repositories" above.

R packages from CRAN

While github may hold the latest and greatest, package versions archived to standard repositories are generally the more stable versions. Some of the more popular R packages available from CRAN are listed below.

Name version Last Updated Downloads
msm
flexsurv
MendelianRandomization
MRZero
coloc
PReMiuM
bcrm
crmPack
curtailment
batchmix

Pinned Loading

  1. BASiCS BASiCS Public

    Forked from catavallejos/BASiCS

    BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version (forked to t…

    R

  2. coloc coloc Public

    Forked from chr1swallace/coloc

    Repo for the R package coloc (forked to the unit's github)

    R

  3. msm msm Public

    Forked from chjackson/msm

    The msm R package for continuous-time multi-state modelling of panel data (forked to the unit's github)

    R

Repositories

Showing 10 of 40 repositories
  • survextrap Public Forked from chjackson/survextrap

    Survival Extrapolation With a Flexible Parametric Model and External Data (forked from https://github.com/chjackson/survextrap)

    MRCBSU/survextrap’s past year of commit activity
    R 0 GPL-3.0 4 0 0 Updated May 2, 2025
  • coloc Public Forked from chr1swallace/coloc

    Repo for the R package coloc (forked to the unit's 8000 github)

    MRCBSU/coloc’s past year of commit activity
    R 0 45 0 0 Updated Apr 24, 2025
  • epispot Public Forked from hruffieux/epispot

    epispot R package - Annotation-driven approach for large-scale joint regression with multiple responses (forked to the unit's github)

    MRCBSU/epispot’s past year of commit activity
    R 0 GPL-3.0 2 0 0 Updated Apr 4, 2025
  • atlasqtl Public Forked from hruffieux/atlasqtl

    atlasqtl R package - Fast global-local hotspot QTL detection (forked to the unit's github)

    MRCBSU/atlasqtl’s past year of commit activity
    R 0 GPL-3.0 2 0 0 Updated Apr 3, 2025
  • MRCBSU/NeuralFineGray’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Mar 20, 2025
  • TrialEmulation Public Forked from Causal-LDA/TrialEmulation

    Algorithms to conduct a Sequence of Target Trials analysis (forked from https://github.com/Causal-LDA/TrialEmulation).

    MRCBSU/TrialEmulation’s past year of commit activity
    R 0 Apache-2.0 9 0 0 Updated Mar 17, 2025
  • flexsurv-dev Public Forked from chjackson/flexsurv

    The flexsurv R package for flexible parametric survival and multi-state modelling (forked to the unit's github)

    MRCBSU/flexsurv-dev’s past year of commit activity
    R 0 28 0 0 Updated Jan 29, 2025
  • pipah-wilkins Public Forked from martinlaw/pipah-wilkins

    Code for CRM-based dose finding and interim analysis for PIPAH study

    MRCBSU/pipah-wilkins’s past year of commit activity
    R 0 1 0 0 Updated Dec 13, 2024
  • vbvarsel Public Forked from ANardo9/vbvarsel

    Variable Bound Variable Selection Clustering Algorithm developed at the MRC BSU

    MRCBSU/vbvarsel’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Dec 2, 2024
  • msm Public Forked from chjackson/msm

    The msm R package for continuous-time multi-state modelling of panel data (forked to the unit's github)

    MRCBSU/msm’s past year of commit activity
    R 0 19 0 0 Updated Nov 16, 2024

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