8000 MysoreSparrow (Keshava Prasad Gubbi) / Starred · GitHub
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Starred repositories

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This repository contains the Hugging Face Agents Course.

MDX 19,079 1,270 Updated May 28, 2025

Flexpilot - Open-Source, Native and a True GitHub Copilot Alternative for VS Code

TypeScript 810 15 Updated Feb 1, 2025

Learning Single-Cell Perturbation Responses using Neural Optimal Transport

Python 136 16 Updated Oct 31, 2024

Analyzing and visualizing KEGG information using the grammar of graphics

R 229 16 Updated Mar 29, 2025

21 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/

Jupyter Notebook 84,105 43,820 Updated May 29, 2025

In this repository I am expending sklearn classes to better handle RNA data

Python 2 Updated May 23, 2023

Visualization of Functional Enrichment Result

R 243 74 Updated Apr 29, 2025

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

1 1 Updated Aug 3, 2023

Metric Learning on L1K, and other datasets

R 4 Updated Jan 15, 2024

scikit-learn: machine learning in Python

Python 62,180 25,880 Updated May 29, 2025

Generate high quality, publication ready visualizations for single cell transcriptomics data.

R 195 14 Updated May 25, 2025

repository for the single cell RNA-Seq workshop

HTML 29 28 Updated Apr 20, 2021

scripts and notebooks from sanbomics

Jupyter Notebook 409 149 Updated Nov 25, 2024
R 3 2 Updated Jun 10, 2022

Environmental metagenomics, Spring 2023, Physalia Courses

5 3 Updated Aug 16, 2023

Advanced Python Mastery (course by @dabeaz)

Python 11,181 1,900 Updated Aug 10, 2024

Differential Gene Expression Analysis for dose dependent single cell gene expression data

R 3 Updated Mar 18, 2025

Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are significantly different to one another in terms of their gene expr…

Jupyter Notebook 37 6 Updated Aug 10, 2023

Learning motif contributions to cell transitions using sequence features and graphs.

Python 28 Updated Aug 30, 2024

The Hitchiker's Guide to PyTorch

1,198 75 Updated Sep 13, 2021

🏅 Collection of Kaggle Solutions and Ideas 🏅

HTML 5,825 2,185 Updated May 9, 2025

Statistical approach for removing unwanted variation from multiple single-cell datasets

R 67 13 Updated Apr 12, 2024
R 7 2 Updated Aug 21, 2024

Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data

R 12 2 Updated Dec 7, 2021

Omics Data Analysis Framework for Regulatory application

Shell 2 4 Updated Nov 25, 2021
C++ 23 8 Updated Nov 14, 2024

Dose Response for Omics

R 6 3 Updated Mar 31, 2025

Benchmarking computational single cell ATAC-seq methods

Jupyter Notebook 183 40 Updated Nov 30, 2020
Jupyter Notebook 51 9 Updated Sep 11, 2024
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